Jiaofang Shao@NJMU

Publication

  • Selected
    • be shamed
  • Other
    • Zhu, X., Qi, C., Wang, R., Lee, J. H., Shao, J., Bei, L., Xiong, F., Nguyen, P. T., Li, G., Krakowiak, J., Koh, S. P., Simon, L. M., Han, L., Moore, T. I. & Li, W. Acute depletion of human core nucleoporin reveals direct roles in transcription control but dispensability for 3D genome organization. Cell reports 41, 111576, doi:10.1016/j.celrep.2022.111576 (2022).
    • Zan, Y., Song, W., Wang, Y., Shao, J., Wang, Z., Zhao, W., Wu, J. & Xu, W. Nomogram for predicting in-hospital mortality of nonagenarians with community-acquired pneumonia. Geriatr Gerontol Int 22, 635-641, doi:10.1111/ggi.14430 (2022).
    • Shao, J., Jiang, Y. & Fang, Z. Editorial: Single cell intelligence and tissue engineering. Front Bioeng Biotechnol 10, 1019929, doi:10.3389/fbioe.2022.1019929 (2022).
    • Duan, W., Li, L., Li, X., Zhu, M., Wu, L., Wu, W., Li, K., Liang, Y., Ding, R., You, W., Wang, Z., Huang, B., Wu, M., Zhang, T., Li, J., Li, Y., Shao, J., Lin, C., Li, P., Wang, Q., Wang, S., Xia, X., Liu, Y. & Lyu, S. Association of blood glucose level and prognosis of inpatients with coexistent diabetes and COVID-19. Endocrine 75, 1-9, doi:10.1007/s12020-021-02923-7 (2022).
    • Lee, J. H., Wang, R., Xiong, F., Krakowiak, J., Liao, Z., Nguyen, P. T., Moroz-Omori, E. V., Shao, J., Zhu, X., Bolt, M. J., Wu, H., Singh, P. K., Bi, M., Shi, C. J., Jamal, N., Li, G., Mistry, R., Jung, S. Y., Tsai, K. L., Ferreon, J. C., Stossi, F., Caflisch, A., Liu, Z., Mancini, M. A. & Li, W. Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation. Mol Cell, doi:10.1016/j.molcel.2021.07.024 (2021).
    • Shao, J., Liang, Y., Li, Y., Ding, R., Zhu, M., You, W., Wang, Z., Huang, B., Wu, M., Zhang, T., Li, K., Wu, W., Wu, L., Wang, Q., Xia, X., Wang, S. & Lu, L. Implications of liver injury in risk-stratification and management of patients with COVID-19. Hepatol Int 15, 202-212, doi:10.1007/s12072-020-10123-0 (2021).
    • Oh, S., Shao, J., Mitra, J., Xiong, F., D’Antonio, M., Wang, R., Garcia-Bassets, I., Ma, Q., Zhu, X., Lee, J. H., Nair, S. J., Yang, F., Ohgi, K., Frazer, K. A., Zhang, Z. D., Li, W. & Rosenfeld, M. G. Enhancer release and retargeting activates disease-susceptibility genes. Nature, doi:10.1038/s41586-021-03577-1 (2021).
    • Poon, E. N., Luo, X. L., Webb, S. E., Yan, B., Zhao, R., Wu, S. C. M., Yang, Y., Zhang, P., Bai, H., Shao, J., Chan, C. M., Chan, G. C., Tsang, S. Y., Gundry, R. L., Yang, H. T. & Boheler, K. R. The cell surface marker CD36 selectively identifies matured, mitochondria-rich hPSC-cardiomyocytes. Cell Res, doi:10.1038/s41422-020-0292-y (2020).
    • Nguyen, T. M., Kabotyanski, E. B., Reineke, L. C., Shao, J., Xiong, F., Lee, J. H., Dubrulle, J., Johnson, H., Stossi, F., Tsoi, P. S., Choi, K. J., Ellis, A. G., Zhao, N., Cao, J., Adewunmi, O., Ferreon, J. C., Ferreon, A. C. M., Neilson, J. R., Mancini, M. A., Chen, X., Kim, J., Ma, L., Li, W. & Rosen, J. M. The SINEB1 element in the long non-coding RNA Malat1 is necessary for TDP-43 proteostasis. Nucleic Acids Res 48, 2621-2642, doi:10.1093/nar/gkz1176 (2020).
    • Bai, X., Shao, J., Zhou, S., Zhao, Z., Li, F., Xiang, R., Zhao, A. Z. & Pan, J. Inhibition of lung cancer growth and metastasis by DHA and its metabolite, RvD1, through miR-138-5p/FOXC1 pathway. J Exp Clin Cancer Res 38, 479, doi:10.1186/s13046-019-1478-3 (2019).
    • Wu, W., Wu, L., Zhu, M., Wang, Z., Wu, M., Li, P., Nie, Y., Lin, X., Hu, J., Eskilsson, E., Wang, Q., Shao, J. & Lyu, S. miRNA Mediated Noise Making of 3’UTR Mutations in Cancer. Genes (Basel) 9, doi:10.3390/genes9110545 (2018).
    • Wang, X., Jiang, H., Wu, W., Zhang, R., Wu, L., Chen, H., Li, P., Nie, Y., Shao, J., Li, Y., Lin, X., Lv, S., Wang, Q. & Hu, J. An Integrating Approach for Genome-Wide Screening of MicroRNA Polymorphisms Mediated Drug Response Alterations. Int J Genomics 2017, 1674827, doi:10.1155/2017/1674827 (2017).
    • An, X., Shao, J., Zhang, H., Ren, X., Ho, V. W. S., Li, R., Wong, M. K. & Zhao, Z. Comparative proteome analysis between C . briggsae embryos and larvae reveals a role of chromatin modification proteins in embryonic cell division. Sci Rep 7, 4296, doi:10.1038/s41598-017-04533-8 (2017).
    • Pan, J., Yang, Q., Shao, J., Zhang, L., Ma, J., Wang, Y., Jiang, B. H., Leng, J. & Bai, X. Cyclooxygenase-2 induced beta1-integrin expression in NSCLC and promoted cell invasion via the EP1/MAPK/E2F-1/FoxC2 signal pathway. Sci Rep 6, 33823, doi:10.1038/srep33823 (2016).
    • Zhao, P., Liu, P., Shao, J., Li, C., Wang, B., Guo, X., Yan, B., Xia, Y. & Peng, M. Analysis of different strategies adapted by two cassava cultivars in response to drought stress: ensuring survival or continuing growth. Journal of experimental botany 66, 1477-1488, doi:10.1093/jxb/eru507 (2015).
    • Zhang, J., Yan, B., Spath, S. S., Qun, H., Cornelius, S., Guan, D., Shao, J., Hagiwara, K., Van Waes, C., Chen, Z., Su, X. & Bi, Y. Integrated transcriptional profiling and genomic analyses reveal RPN2 and HMGB1 as promising biomarkers in colorectal cancer. Cell & bioscience 5, 53, doi:10.1186/s13578-015-0043-9 (2015).
    • Ho, V. W., Wong, M. K., An, X., Guan, D., Shao, J., Ng, H. C., Ren, X., He, K., Liao, J., Ang, Y., Chen, L., Huang, X., Yan, B., Xia, Y., Chan, L. L., Chow, K. L., Yan, H. & Zhao, Z. Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry. Mol Syst Biol 11, 814, doi:10.15252/msb.20145857 (2015).
    • Bi, Y., Ren, X., Yan, C., Shao, J., Xie, D. & Zhao, Z. A Genome-Wide Hybrid Incompatibility Landscape between Caenorhabditis briggsae and C. nigoni. PLoS Genet 11, e1004993, doi:10.1371/journal.pgen.1004993 (2015).
    • Zhang, J., Jiang, H., Shao, J., Mao, R., Liu, J., Ma, Y., Fang, X., Zhao, N., Zheng, S. & Lin, B. SOX4 inhibits GBM cell growth and induces G0/G1 cell cycle arrest through Akt-p53 axis. BMC neurology 14, 207, doi:10.1186/s12883-014-0207-y (2014).
    • He, K., Zhou, T., Shao, J., Ren, X., Zhao, Z. & Liu, D. Dynamic regulation of genetic pathways and targets during aging in Caenorhabditis elegans. Aging 6, 215-230 (2014).
    • He, K., Shao, J., Zhao, Z. & Liu, D. The comprehensive transcriptional analysis in Caenorhabditis elegans by integrating ChIP-seq and gene expression data. Genetics research 96, e005, doi:10.1017/S0016672314000081 (2014).
    • Guan, D., Shao, J., Zhao, Z., Wang, P., Qin, J., Deng, Y., Boheler, K. R., Wang, J. & Yan, B. PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data. Nucleic Acids Res 42, W130-136, doi:10.1093/nar/gku471 (2014).
    • Guan, D., Shao, J., Deng, Y., Wang, P., Zhao, Z., Liang, Y., Wang, J. & Yan, B. CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data. Bioinformatics 30, 1190-1192, doi:10.1093/bioinformatics/btt761 (2014).
    • Chen, C., Liu, J., Zhou, F., Sun, J., Li, L., Jin, C., Shao, J., Jiang, H., Zhao, N., Zheng, S. & Lin, B. Next-generation sequencing of colorectal cancers in chinese: identification of a recurrent frame-shift and gain-of-function Indel mutation in the TFDP1 gene. Omics 18, 625-635, doi:10.1089/omi.2014.0058 (2014).
    • Yan, B., Li, H., Yang, X., Shao, J., Jang, M., Guan, D., Zou, S., Van Waes, C., Chen, Z. & Zhan, M. Unraveling regulatory programs for NF-kappaB, p53 and microRNAs in head and neck squamous cell carcinoma. PLoS One 8, e73656, doi:10.1371/journal.pone.0073656 (2013).
    • Shao, J., Zhang, J., Zhang, Z., Jiang, H., Lou, X., Huang, B., Foltz, G., Lan, Q., Huang, Q. & Lin, B. Alternative polyadenylation in glioblastoma multiforme and changes in predicted RNA binding protein profiles. Omics 17, 136-149, doi:10.1089/omi.2012.0098 (2013).
    • Shao, J., Lou, X., Wang, J., Zhang, J., Chen, C., Hua, D., Mo, F., Han, X., Zheng, S. & Lin, B. Targeted re-sequencing identified rs3106189 at the 5′ UTR of TAPBP and rs1052918 at the 3′ UTR of TCF3 to be associated with the overall survival of colorectal cancer patients. PLoS One 8, e70307, doi:10.1371/journal.pone.0070307 (2013).
    • Shao, J., He, K., Wang, H., Ho, W. S., Ren, X., An, X., Wong, M. K., Yan, B., Xie, D., Stamatoyannopoulos, J. & Zhao, Z. Collaborative Regulation of Development but Independent Control of Metabolism by Two Epidermis-specific Transcription Factors in Caenorhabditis elegans. J Biol Chem 288, 33411-33426, doi:10.1074/jbc.M113.487975 (2013).
    • Li, C., Shao, J., Wang, Y., Li, W., Guo, D., Yan, B., Xia, Y. & Peng, M. Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense. BMC Genomics 14, 851, doi:10.1186/1471-2164-14-851 (2013).
    • Fang, X., Yoon, J. G., Li, L., Yu, W., Shao, J., Hua, D., Zheng, S., Hood, L., Goodlett, D. R., Foltz, G. & Lin, B. The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. BMC Genomics 12, 11, doi:10.1186/1471-2164-12-11 (2011).
    • Liu, X., Jiang, J., Shao, J., Yin, Y. & Ma, Z. Gene transcription profiling of Fusarium graminearum treated with an azole fungicide tebuconazole. Appl Microbiol Biotechnol 85, 1105-1114, doi:10.1007/s00253-009-2273-4 (2010).
    • Fang, X., Yu, W., Li, L., Shao, J., Zhao, N., Chen, Q., Ye, Z., Lin, S. C., Zheng, S. & Lin, B. ChIP-seq and functional analysis of the SOX2 gene in colorectal cancers. Omics 14, 369-384, doi:10.1089/omi.2010.0053 (2010).
    • Cheng, Y., Wang, J., Shao, J., Chen, Q., Mo, F., Ma, L., Han, X., Zhang, J., Chen, C., Zhang, C., Lin, S., Yu, J., Zheng, S., Lin, S. C. & Lin, B. Identification of novel SNPs by next-generation sequencing of the genomic region containing the APC gene in colorectal cancer patients in China. Omics 14, 315-325, doi:10.1089/omi.2010.0018 (2010).